Latest Publications

Gallegos JE, Rogers M, Cialek C, Peccoud J. (2020) Rapid, robust plasmid verification by de nova assembly of short sequencing reads, Nucleic Acids Research DOI:10.1092/nar/gkaa727

Gallegos JE, Kar DM, Ray I, Ray I, Peccoud J. (2020) Securing the exchange of synthetic genetic constructs using digital signatures, ACS Synthetic Biology  DOI:10.1021/acssynbio.0c00401

Banerjee A, Adames NR, Peccoud J, Tyson JJ. (2020) A stochastic model for error correction of kinetochore-microtubule attachments and its coupling to the spindle assembly checkpoint, PloS one DOI:10.1371/journal.pone.0236293

Kar DM, Ray I, Gallegos J, Peccoud J, Ray I. (2020) Synthesizing DNA molecules with identity-based digital signatures to prevent malicious tampering and enabling source attribution, Journal of Computer Security DOI:10.3233/JCS-191383

Gallegos JE, Adames NR, Rogers MF, Kraikivski P, Ibele A, Nurzynski-Loth K, Kudlow E, Murali TM, Tyson JJ, Peccoud J. (2020) Genetic interactions derived from high-throughput phenotyping of 6589 yeast cell cycle mutants, Systems Biology and Applications DOI:10.1038/s41540-020-0134-z

Gallegos JE, Hayrynen S, Adames NR, Peccoud J. (2020) Challenges and opportunities for strain verification by whole-genome sequencing, Scientific Reports DOI:10.1038/s41598-020-62364-6

Ahmadian M, Tyson JJ, Peccoud J, et al. (2020) A hybrid stochastic model of the budding yeast cell cycle, Systems Biology and Applications DOI:10.1038/s41540-020-0126-z

Adames NR, Gallegos JE, Hunt SY, So WK, Peccoud J (2019) Hands-on introduction to synthetic biology for security professionals, Trends in Biotechnology DOI:10.1016/J.TIBTECH.2019.06.005

Adames NR, Gallegos JE, Peccoud J (2019) Yeast genetic interaction screens in the age of CRISPR/Cas, Current Genetics 65: 307. DOI:10.1007/S00294-018-0887-8

Gallegos JE, Boyer C, Pauwels E, Kaplan WA, Peccoud J (2018) The Open Insulin Project: A case study for ‘biohacked’ medicines, Trends in Biotechnology 36:1211. DOI:10.1016/J.TIBTECH.2018.07.009

Kar DM, Ray I, Gallegos JE, Peccoud J (2018) Digital signatures to ensure the authenticity and integrity of synthetic DNA molecules. In Proceedings of the New Security Paradigms Workshop (NSPW ’18):110. DOI:10.1145/3285002.3285007

Murch RS, So KL, Raman S, Buchholz WG , Peccoud J (2018) Cyberbiosecurity: An emerging new discipline to help safeguard the bioeconomy Frontiers in Bioengineering and Biotechnology 6:39. DOI:10.3389/FBIOE.2018.00039

Pratapa A, Adames A, Kraikivski P, Franzese N, Tyson JJ, Peccoud J, Murali TM (2018) CrossPlan: Systematic planning of genetic crosses to validate mathematical models Bioinformatics 34:2237. DOI:10.1093/BIOINFORMATICS/BTY072

Peccoud J, Gallegos JE, Murch R, Buchholtz W, Raman S (2018) Cyberbiosecurity: from naïve trust to risk awareness Trends in Biotechnology 36:4 DOI:10.1016/J.TIBTECH.2017.10.012